Jatropha Genome Database

JcCB0245051.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0245051.10 - phase: 0 /partial
         (219 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_s18684                                                            434   e-122
KJC_c02761                                                            389   e-108

>KJC_s18684 
          Length = 466

 Score =  434 bits (219), Expect = e-122
 Identities = 219/219 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtagtgttcaaggtttcgcgagtggagactacgcctttcgatggccagaaaccggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 atggtagtgttcaaggtttcgcgagtggagactacgcctttcgatggccagaaaccggga 275

                                                                       
Query: 61  acttctggtcttcgtaagaaggtgaaagtgttcgtgcaacctaattacttgcacaatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 acttctggtcttcgtaagaaggtgaaagtgttcgtgcaacctaattacttgcacaatttt 335

                                                                       
Query: 121 gttcaggcaacatttaatgccttgactgctgaaaaagtcagaggtgctacacttgttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gttcaggcaacatttaatgccttgactgctgaaaaagtcagaggtgctacacttgttgtt 395

                                                  
Query: 181 tctggtgatggccgctacttctcaaaggatgccattcag 219
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tctggtgatggccgctacttctcaaaggatgccattcag 434


>KJC_c02761 
          Length = 1711

 Score =  389 bits (196), Expect = e-108
 Identities = 215/219 (98%), Gaps = 3/219 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtagtgttcaaggtttcgcgagtggagactacgcctttcgatggccagaaaccggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 atggtagtgttcaaggtttcgcgagtggagactacgcctttcgatggccagaaaccggga 170

                                                                       
Query: 61  acttctggtcttcgtaagaaggtgaaagtgttcgtgcaacctaattacttgcacaatttt 120
           |||||||||||||||||||  ||||| ||||||||||||| |||||||||||||||||||
Sbjct: 171 acttctggtcttcgtaaga--gtgaa-gtgttcgtgcaacttaattacttgcacaatttt 227

                                                                       
Query: 121 gttcaggcaacatttaatgccttgactgctgaaaaagtcagaggtgctacacttgttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gttcaggcaacatttaatgccttgactgctgaaaaagtcagaggtgctacacttgttgtt 287

                                                  
Query: 181 tctggtgatggccgctacttctcaaaggatgccattcag 219
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tctggtgatggccgctacttctcaaaggatgccattcag 326