Jatropha Genome Database

JcCB0244361.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0244361.20 - phase: 0 /pseudo/partial/short
         (152 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00190                                                            192   2e-49
KJC_c00045                                                            192   2e-49
KJC_c00169                                                            176   9e-45

>KJC_c00190 
          Length = 1490

 Score =  192 bits (97), Expect = 2e-49
 Identities = 115/121 (95%)
 Strand = Plus / Minus

                                                                       
Query: 32  gtaatcgattagttaacacgttgattaactgtattctgaaacatggacaaaaatcattgg 91
           |||||||||||||||||| |||| ||||| ||||||||||||| ||| ||||||||||||
Sbjct: 418 gtaatcgattagttaacatgttggttaaccgtattctgaaacacggaaaaaaatcattgg 359

                                                                       
Query: 92  cttatcaaattatctatcgagccatgaaaaagattcaacaaaagacataaacaaatccac 151
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 358 cttatcaaattatctatcgagccatgaaaaagattcaacaaaagacagaaacaaatccac 299

            
Query: 152 t 152
           |
Sbjct: 298 t 298


>KJC_c00045 
          Length = 8315

 Score =  192 bits (97), Expect = 2e-49
 Identities = 115/121 (95%)
 Strand = Plus / Minus

                                                                        
Query: 32   gtaatcgattagttaacacgttgattaactgtattctgaaacatggacaaaaatcattgg 91
            |||||||||||||||||| |||| ||||| ||||||||||||| ||| ||||||||||||
Sbjct: 6007 gtaatcgattagttaacatgttggttaaccgtattctgaaacacggaaaaaaatcattgg 5948

                                                                        
Query: 92   cttatcaaattatctatcgagccatgaaaaagattcaacaaaagacataaacaaatccac 151
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5947 cttatcaaattatctatcgagccatgaaaaagattcaacaaaagacagaaacaaatccac 5888

             
Query: 152  t 152
            |
Sbjct: 5887 t 5887


>KJC_c00169 
          Length = 2426

 Score =  176 bits (89), Expect = 9e-45
 Identities = 114/121 (94%), Gaps = 1/121 (0%)
 Strand = Plus / Minus

                                                                       
Query: 32  gtaatcgattagttaacacgttgattaactgtattctgaaacatggacaaaaatcattgg 91
           |||||||||||||||||| |||| ||||| ||||||||||||| ||| ||||||||||||
Sbjct: 421 gtaatcgattagttaacatgttggttaaccgtattctgaaacacgga-aaaaatcattgg 363

                                                                       
Query: 92  cttatcaaattatctatcgagccatgaaaaagattcaacaaaagacataaacaaatccac 151
           |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 362 cttatcaaattatctatcgagctatgaaaaagattcaacaaaagacagaaacaaatccac 303

            
Query: 152 t 152
           |
Sbjct: 302 t 302