Jatropha Genome Database

JcCB0242921.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0242921.10 - phase: 1 /pseudo
         (557 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08413                                                            878   0.0  

>KJC_c08413 
          Length = 546

 Score =  878 bits (443), Expect = 0.0
 Identities = 443/443 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagtggcaggccatctctcaaccttgaaagacgtctggatcatgacggacatcctcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ctagtggcaggccatctctcaaccttgaaagacgtctggatcatgacggacatcctcttg 163

                                                                       
Query: 61  ccatcacagcacctgatgcagttgcagcaagtggagttcctccatggaattggagggaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ccatcacagcacctgatgcagttgcagcaagtggagttcctccatggaattggagggaga 223

                                                                       
Query: 121 ctcctggaaatggtcctgagaatcagtcatttggtgggagagtgataactgtcaagtatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ctcctggaaatggtcctgagaatcagtcatttggtgggagagtgataactgtcaagtatt 283

                                                                       
Query: 181 tggactatacaagaagggtaggtgttgatggcaccacagatgccatcaaggaggcaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tggactatacaagaagggtaggtgttgatggcaccacagatgccatcaaggaggcaatca 343

                                                                       
Query: 241 agtcagctttcagattaaggaccaaacgtgcattttggttggaggatgaagaccagataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agtcagctttcagattaaggaccaaacgtgcattttggttggaggatgaagaccagataa 403

                                                                       
Query: 301 ttcgtagtcttgacagagacatgccagtggggaattacacacttcaccttgatgaaggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttcgtagtcttgacagagacatgccagtggggaattacacacttcaccttgatgaaggat 463

                                                                       
Query: 361 tagccgtcaaagtgtgtctatatgatgaatcagaccacatgccagtacatacggaggaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tagccgtcaaagtgtgtctatatgatgaatcagaccacatgccagtacatacggaggaaa 523

                                  
Query: 421 aagttttctacactgaagatgac 443
           |||||||||||||||||||||||
Sbjct: 524 aagttttctacactgaagatgac 546