Jatropha Genome Database

JcCB0242111.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0242111.10 - phase: 2 /partial
         (685 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01725                                                             66   1e-10

>KJC_c01725 
          Length = 959

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 111/137 (81%)
 Strand = Plus / Minus

                                                                       
Query: 83  ggtggagatcagaaggggaagaagaaggggcttcctgctaaaaatttgatggcagaaagg 142
           ||||| ||||| ||||||||||| |||||  | || ||||| ||||||||||| || || 
Sbjct: 140 ggtggtgatcaaaaggggaagaaaaagggaatgccagctaagaatttgatggctgagaga 81

                                                                       
Query: 143 aggcgccggaagaagctcaatgataggttatatatgcttaggtctgtagttccaaagatt 202
           ||| |  | ||||  ||||| |||||| | || |||||||| ||||| || || ||||||
Sbjct: 80  aggagaagaaagagactcaacgataggctctacatgcttagatctgttgtccccaagatt 21

                            
Query: 203 agcaagatggacagggc 219
           ||||||||||| |||||
Sbjct: 20  agcaagatggatagggc 4