Jatropha Genome Database

JcCB0240171.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0240171.10 + phase: 0 /partial
         (724 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11167                                                            702   0.0  

>KJC_c11167 
          Length = 639

 Score =  702 bits (354), Expect = 0.0
 Identities = 394/401 (98%), Gaps = 6/401 (1%)
 Strand = Plus / Plus

                                                                       
Query: 324 caatcgatggtccaagattgcgcaacacttgccgggtagaactgacaatgagatcaagaa 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 caatcgatggtccaagattgcgcaacacttgccgggtagaactgacaatgagatcaagaa 247

                                                                       
Query: 384 ttactggaggacgcgcgtgcaaaagcatgcgaaacagcttaaatgtgacgtgaatagcaa 443
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttactggaggacgcgcgtgcaaa-gcatgcgaaacagcttaaatgtgacgtgaatagcaa 306

                                                                       
Query: 444 gcaattcaaagatactatgcgatacttatggatgcctaggttaattgaaagaattcaagc 503
           ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 307 gcaattcaaagatactatgcgatacttatggatgcctaggttaat-gaaaga-ttcaagc 364

                                                                       
Query: 504 tgcgtccgccgctaacgccaccgctaccagtacaacctcagctgcacccgcaatcgcaga 563
           ||||||   |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgcgtcg--cgctaacgccac-gctaccagtacaacctcagctgcacccgcaatcgcaga 421

                                                                       
Query: 564 ccccgcccatcacaacctcactgaaatgggtaccgggcaatgggtcatgggtcaaggtaa 623
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ccccgcccatcacaacctcactgaaatgggtaccgggcaatgggtcatgggtcaaggtaa 481

                                                                       
Query: 624 tggacttgtaggaaatgagcagtttgggattactcgttacactactcctgagagttctag 683
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tggacttgtaggaaatgagcagtttgggattactcgttacactactcctgagagttctag 541

                                                    
Query: 684 tacggctgcctcatcggactcgtttgggacgcaggtttcgc 724
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tacggctgcctcatcggactcgtttgggacgcaggtttcgc 582



 Score =  230 bits (116), Expect = 4e-60
 Identities = 116/116 (100%)
 Strand = Plus / Plus

                                                                       
Query: 214 ggaaaaagctgcagattaagatggctgaactatttaagacctgatgttcgacgtggaaat 273
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggaaaaagctgcagattaagatggctgaactatttaagacctgatgttcgacgtggaaat 60

                                                                   
Query: 274 atcactctggaagaacagctcatgatcctggagcttcattctcgatggggcaatcg 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atcactctggaagaacagctcatgatcctggagcttcattctcgatggggcaatcg 116