Jatropha Genome Database

JcCB0238621.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0238621.10 - phase: 0 /pseudo/partial
         (435 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c12218                                                            739   0.0  

>KJC_c12218 
          Length = 595

 Score =  739 bits (373), Expect = 0.0
 Identities = 380/381 (99%), Gaps = 1/381 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gcttcttcaatgctttctttagcttccacatctccttctgcttcgctttccgtgcatgag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gcttcttcaatgctttctttagcttccacatctccttctgcttcgctttccgtgcatgag 60

                                                                       
Query: 64  actctcaagggaaaggtgaggcatggaactggcagtttgactacatggtttaacaaggag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  actctcaagggaaaggtgaggcatggaactggcagtttgactacatggtttaacaaggag 120

                                                                       
Query: 124 aaagcaaatcgctttaggaacactaagtctccaggaaggatatctatggctattgcagtc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaagcaaatcgctttaggaacactaagtctccaggaaggatatctatggctattgcagtc 180

                                                                       
Query: 184 aatgtatctcgtttcgaaggtataacaatggct-cccctgatccaattcttggtgtatca 242
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 181 aatgtatctcgtttcgaaggtataacaatggctccccctgatccaattcttggtgtatca 240

                                                                       
Query: 243 gaagcttttcgagcagacacaaatgatttgaaactcaaccttggagttggggcctaccga 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaagcttttcgagcagacacaaatgatttgaaactcaaccttggagttggggcctaccga 300

                                                                       
Query: 303 actgaagagctacatccttatgttctcaatgttgttaagaaggcagagaatcttatgctg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 actgaagagctacatccttatgttctcaatgttgttaagaaggcagagaatcttatgctg 360

                                
Query: 363 gagaggggtgaatataaagag 383
           |||||||||||||||||||||
Sbjct: 361 gagaggggtgaatataaagag 381