Jatropha Genome Database
- JcCB0235711.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0235711.10 - phase: 0 /partial
(813 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c06534 1532 0.0
KJC_c04189 78 4e-14
KJC_s13796 74 6e-13
>KJC_c06534
Length = 1439
Score = 1532 bits (773), Expect = 0.0
Identities = 808/813 (99%), Gaps = 5/813 (0%)
Strand = Plus / Minus
Query: 3 gtatttacctacgccatcaaatattcggatatggaagctagacagtctgttgaagaggac 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 gtatttacctacgccatcaaatattcggatatggaagctagacagtctgttgaagaggac 816
Query: 63 attaaaaggaatcatagagaaaagattaaggtcaaaagatagtactaaaa-cttatggag 121
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 815 attaaaaggaatcatagagaaaagattaaggtcaaaagatagtactaaaaacttatggag 756
Query: 122 atgatttactagctacgatgatagaatattcagaaattgcagatgaaaccaaatttaata 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 atgatttactagctacgatgatagaatattcagaaattgcagatgaaaccaaatttaata 696
Query: 182 ctccaaagttgagagtggacgaaatcttggagaactgcaaagcatttttctttgccgggc 241
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ctccaaagt-gagagtggacgaaatcttggagaactgcaaagcatttttctttgccgggc 637
Query: 242 acgagactacttctggtttactaacatggacagtcttcctgttgagcttacaccaagaat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 acgagactacttctggtttactaacatggacagtcttcctgttgagcttacaccaagaat 577
Query: 302 ggcaagaaagactcagaaaagaggt-gttaaaagaatgtctgatggaaattcctgatgct 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 576 ggcaagaaagactcagaaaagaggtagttaaaagaatgtctgatggaaattcctgatgct 517
Query: 361 gacatgttagccaagttaaaattgatgaatatggttctactagagacgatgaggctgtat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gacatgttagccaagttaaaattgatgaatatggttctactagagacgatgaggctgtat 457
Query: 421 ggtccagcaatagatcttatcaggacgccattggaagatactaaattgggaaacttgatg 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 456 ggtccagcaatagatcttatcaggacgccattg-aagatactaaattgggaaacttgatg 398
Query: 481 atcccaaaaggtacttctatacaaatcccgattataagaattcacaggaacaaaaaatac 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 397 atcccaaaaggtacttctatacaaatcccgat-ataagaattcacaggaacaaaaaatac 339
Query: 541 tggggagacgatgcagatgaatttaatccattcagatttgcaaacggggtctcaaaagct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tggggagacgatgcagatgaatttaatccattcagatttgcaaacggggtctcaaaagct 279
Query: 601 gcgaaacacccaaatgctttccttggctttggaatgggtcccagagtttgcattggccag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gcgaaacacccaaatgctttccttggctttggaatgggtcccagagtttgcattggccag 219
Query: 661 aattttgcgatgcttgaagctaagacagtgcttactttgattcttcaaaggttgtccctt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 aattttgcgatgcttgaagctaagacagtgcttactttgattcttcaaaggttgtccctt 159
Query: 721 tccctttcccctgaatataaacacactcctgttaatcatattactttgcatcctcacaac 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 tccctttcccctgaatataaacacactcctgttaatcatattactttgcatcctcacaac 99
Query: 781 ggactacccataattgtagaacctctgtctcta 813
|||||||||||||||||||||||||||||||||
Sbjct: 98 ggactacccataattgtagaacctctgtctcta 66
>KJC_c04189
Length = 474
Score = 77.8 bits (39), Expect = 4e-14
Identities = 115/139 (82%), Gaps = 1/139 (0%)
Strand = Plus / Minus
Query: 258 tttactaacatggacagtcttcctgttgagcttacaccaagaatggcaagaaagactcag 317
||||||||| |||||| ||| ||||||||||||| ||| |||||| ||| ||| ||
Sbjct: 273 tttactaacttggacaactttcttgttgagcttacatacagactggcaaaaaa-acttag 215
Query: 318 aaaagaggtgttaaaagaatgtctgatggaaattcctgatgctgacatgttagccaagtt 377
| |||||||| | ||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct: 214 agaagaggtgctgaaagaatgtggaatggaaattcctgatgcagacatgttggccaaatt 155
Query: 378 aaaattgatgaatatggtt 396
|||||| | |||||||||
Sbjct: 154 aaaattagttaatatggtt 136
>KJC_s13796
Length = 563
Score = 73.8 bits (37), Expect = 6e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 3 gtatttacctacgccatcaaatattcggatatggaag 39
|||||||||||||||||||||||||||||||||||||
Sbjct: 527 gtatttacctacgccatcaaatattcggatatggaag 563