Jatropha Genome Database

JcCB0234411.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0234411.10 - phase: 0 /pseudo
         (241 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01751                                                            309   2e-84

>KJC_c01751 
          Length = 1155

 Score =  309 bits (156), Expect = 2e-84
 Identities = 203/224 (90%), Gaps = 21/224 (9%)
 Strand = Plus / Minus

                                                                        
Query: 1    atgtctgttgccgagctaaaggcgcgccacgtggcggcgactgagacggtgaatactctt 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1137 atgtctgttgccgagctaaaggcgcgccacgtggcggcgactgagacggtgaatactctt 1078

                                                                        
Query: 61   agagaacgcttgaagcagaagcggcttcttttgctagacactgacgatctgattgaactt 120
            |||||||||||||||||||||||||||||||||||||||||||||               
Sbjct: 1077 agagaacgcttgaagcagaagcggcttcttttgctagacactgac--------------- 1033

                                                                        
Query: 121  gtggcagttgctggatacgcgagggcgcaggggaagcctccggttagctttgggcctacc 180
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 ------gttgctggatacgcgagggcgcaggggaagcctccggttagctttgggcctacc 979

                                                        
Query: 181  gatctggtgtgctgcaggacgcttcagggacacactggcaaggt 224
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978  gatctggtgtgctgcaggacgcttcagggacacactggcaaggt 935