Jatropha Genome Database

JcCB0234291.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0234291.10 - phase: 1 /partial
         (1310 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06276                                                             68   6e-11
KJC_c09355                                                             56   2e-07

>KJC_c06276 
          Length = 537

 Score = 67.9 bits (34), Expect = 6e-11
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                        
Query: 996  agtgctgccatgggatacctggctcctgagtacacaactactggccgtttcactgaaaag 1055
            ||||||||||||||||| || ||||| ||||||| |||||| || | ||| |||||||||
Sbjct: 126  agtgctgccatgggatatctagctccagagtacataactaccggacattttactgaaaag 185

                                      
Query: 1056 agtgatgtttatgcatttggtgtgat 1081
             | || || ||||||||||| |||||
Sbjct: 186  ggcgacgtctatgcatttggagtgat 211


>KJC_c09355 
          Length = 388

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 483 actcagtgcttctctgaggtgaatttgttggg 514
           ||||| ||||||||||||||||||||||||||
Sbjct: 78  actcaatgcttctctgaggtgaatttgttggg 109