Jatropha Genome Database
- JcCB0230371.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0230371.10 - phase: 0 /partial
(1919 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c12054 1417 0.0
KJC_c07967 387 e-107
KJC_c10720 52 5e-06
>KJC_c12054
Length = 755
Score = 1417 bits (715), Expect = 0.0
Identities = 750/755 (99%), Gaps = 5/755 (0%)
Strand = Plus / Minus
Query: 455 agaacatattg-aaaagtg-atcttgttggtttaacggg-ccctataaagtatgattcag 511
||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 755 agaacatattgtaaaagtgtatcttgttggtttaacgggtccctataaagtatgattcag 696
Query: 512 acagatctcggattcttcctgcatatgatgttattaatgtggttgggactggttttagaa 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 acagatctcggattcttcctgcatatgatgttattaatgtggttgggactggttttagaa 636
Query: 572 tggttggtttctggtccaattattctggtttatcaactgtgccacctgagacactctata 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tggttggtttctggtccaattattctggtttatcaactgtgccacctgagacactctata 576
Query: 632 taaggccaccaaatcggtcaagtgcaaaccagcaattgtacagtgttatttggcctggag 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 taaggccaccaaatcggtcaagtgcaaaccagcaattgtacagtgttatttggcctggag 516
Query: 692 agacatcatcaaaaccccgtggatgggttttccctaacaatgggaagcaattgagaattg 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agacatcatcaaaaccccgtggatgggttttccctaacaatgggaagcaattgagaattg 456
Query: 752 gtgtgcccattcgggtcagtttcaaggaatttgtaacacgagtacaaggaactgacatgt 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gtgtgcccattcgggtcagtttcaaggaatttgtaacacgagtacaaggaactgacatgt 396
Query: 812 tcaaaggtttttgcatagatgtatttacagctgctgcaagtttgttaccatatgctgttc 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tcaaaggtttttgcatagatgtatttacagctgctgcaagtttgttaccatatgctgttc 336
Query: 872 cctatcagtttgtcccctttggaaatggtaaagcaaaccc-aagctacacagagcttgtg 930
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 335 cctatcagtttgtcccctttggaaatggtaaagcaaacccaaagctacacagagcttgtg 276
Query: 931 aacatgatcactacgggtgtccttgatgctgttgttggtgatattgctatagtcacaaat 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aacatgatcactacgggtgtccttgatgctgttgttggtgatattgctatagtcacaaat 216
Query: 991 cgaac-aaaaatcgtggattttacgcagccatatgctgcatctggactggttattgtggc 1049
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 cgaacaaaaaatcgtggattttacgcagccatatgctgcatctggactggttattgtggc 156
Query: 1050 cccatttaggaagttgaaatcaggggcctgggctttcttgcagccatttagtccacttat 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 cccatttaggaagttgaaatcaggggcctgggctttcttgcagccatttagtccacttat 96
Query: 1110 gtgggttgtcactgcctgtttcttcattgctgttggcacagttgtgtgggttctggagca 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 gtgggttgtcactgcctgtttcttcattgctgttggcacagttgtgtgggttctggagca 36
Query: 1170 taggataaatgatgaattcaggggcccacctaaac 1204
|||||||||||||||||||||||||||||||||||
Sbjct: 35 taggataaatgatgaattcaggggcccacctaaac 1
>KJC_c07967
Length = 495
Score = 387 bits (195), Expect = e-107
Identities = 216/219 (98%), Gaps = 3/219 (1%)
Strand = Plus / Plus
Query: 1 attgatggaa-ctcgagttgttgttcttcatgtaaattcgaagttgggttttgaagtctt 59
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 278 attgatggaatctcgagttgttgttcttcatgtaaattcgaagttgggttt-gaagtctt 336
Query: 60 ttctgtggcaaaataccttggtatgatgggtaatgggtatgtatggatagccacagattg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttctgtggcaaaataccttggtatgatgggtaatgggtatgtatggatagccacagattg 396
Query: 120 gctctcatccgttttagattcttcttctcctctatcttctgaggccatgggcacgatgca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gctctcatccgttttagattcttcttctcctctatcttctgaggccatgggcacgatgca 456
Query: 180 aggag-ttcttactttgcgtcaacacataccggattcag 217
||||| |||||||||||||||||||||||||||||||||
Sbjct: 457 aggagtttcttactttgcgtcaacacataccggattcag 495
>KJC_c10720
Length = 424
Score = 52.0 bits (26), Expect = 5e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 985 acaaatcgaacaaaaatcgtggattttacgcagccata 1022
|||||| |||||||||| ||||||||||| ||||||||
Sbjct: 360 acaaatagaacaaaaattgtggattttacacagccata 323