Jatropha Genome Database

JcCB0229371.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0229371.10 + phase: 0 /partial
         (1025 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06135                                                             66   2e-10

>KJC_c06135 
          Length = 1530

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 117/145 (80%)
 Strand = Plus / Minus

                                                                        
Query: 344  taattgctctagggactggtggaatcaagccatgtgtctcatcctttggtgctgatcaat 403
            ||||||| || ||||| ||||| ||||||||||| || ||||||||||| ||||| || |
Sbjct: 1019 taattgcacttgggacaggtggtatcaagccatgcgtttcatcctttggggctgaccagt 960

                                                                        
Query: 404  ttgatgaaactgatgatattgaaaaggaaaagaagagctcttttttcaattggttttact 463
            |||| || ||||||  ||  |||  ||  |||||| | ||||| ||||| ||||| ||||
Sbjct: 959  ttgacgacactgatcctaaagaacgggtgaagaagggatctttcttcaactggttctact 900

                                     
Query: 464  tcacaatcaatattggtgcccttgt 488
            |  | |||||||||||||| |||||
Sbjct: 899  tttctatcaatattggtgctcttgt 875



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                        
Query: 128  caggaacttgctacattacaccactgatcggagcctttctagctgatgcatacttgggaa 187
            |||| |||||||| |||||||| || || |||||  | || |||||||| |||| |||||
Sbjct: 1241 caggcacttgctatattacaccccttattggagctgtcctcgctgatgcttactggggaa 1182

                         
Query: 188  gatattggacaat 200
            |||||||||||||
Sbjct: 1181 gatattggacaat 1169