Jatropha Genome Database

JcCB0214691.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0214691.10 + phase: 0 /partial
         (1053 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08309                                                            682   0.0  

>KJC_c08309 
          Length = 593

 Score =  682 bits (344), Expect = 0.0
 Identities = 361/364 (99%), Gaps = 2/364 (0%)
 Strand = Plus / Minus

                                                                       
Query: 601 gctgagcagtcacttcttgtttttgggag-aggatacaactatgcaacagcattggaggg 659
           |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 593 gctgagcagtcacttcttgtttttggtaggaggatacaactatgcaacagcattggaggg 534

                                                                       
Query: 660 tgctctaaaagtgaaggaagtggcacttatgcacagtgaaggaatgcttgccggtgaaat 719
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgctctaaaagtgaaggaagtggcacttatgcacagtgaaggaatgcttgccggtgaaat 474

                                                                       
Query: 720 gaaacatggtcctttggcattggttgacgaaaaccttccaattattgtcattgcgactca 779
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gaaacatggtcctttggcattggttgacgaaaaccttccaattattgtcattgcgactca 414

                                                                       
Query: 780 tgatgcttgcttcagcaagcagcagtcagtcattcagcaacttcatgcacgtaaaggtcg 839
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgatgcttgct-cagcaagcagcagtcagtcattcagcaacttcatgcacgtaaaggtcg 355

                                                                       
Query: 840 cttaattgtgatgtgctcaaaaggggatgctgcatctgtctgtcctgggcaatcgtgccg 899
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cttaattgtgatgtgctcaaaaggggatgctgcatctgtctgtcctgggcaatcgtgccg 295

                                                                       
Query: 900 agtaattgaagtcccacaagttgaggattgtcttcaacctgtagttaatatagttccatt 959
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 agtaattgaagtcccacaagttgaggattgtcttcaacctgtagttaatatagttccatt 235

               
Query: 960 acag 963
           ||||
Sbjct: 234 acag 231