Jatropha Genome Database
- JcCB0212401.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0212401.10 - phase: 0
(468 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c04869 751 0.0
KJC_s21091 70 5e-12
KJC_c08595 62 1e-09
>KJC_c04869
Length = 1067
Score = 751 bits (379), Expect = 0.0
Identities = 393/395 (99%), Gaps = 2/395 (0%)
Strand = Plus / Minus
Query: 36 actggctcttgtcagtggattgaagtgggtggatgaagtcatagccaattctccttatgc 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 actggctcttgtcagtggattgaagtgggtggatgaagtcatagccaattctccttatgc 531
Query: 96 cattacagagcaattcatgaacactctcttcaatgagcataaaattgactatatcataca 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 cattacagagcaattcatgaacactctcttcaatgagcataaaattgactatatcataca 471
Query: 156 tggcgatgatccttgcctgcttcctgatggaactgacgcttatgcattggccaagagggc 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tggcgatgatccttgcctgcttcctgatggaactgacgcttatgcattggccaagagggc 411
Query: 216 tggacgctataagcagattaaacgcactgaaggggtctccagcactgatattgtaggaag 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 410 tggacgctataagcagattaaacgcactgaaggggtctccagcactgatattgta-gaag 352
Query: 276 gatactttctgtggatgatccaaaagtttgtgaagctcatgatgataagttgcctttacc 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gatactttctgtggatgatccaaaagtttgtgaagctcatgatgataagttgcctttacc 292
Query: 336 tagagatgcctgtaaagcaaatcaatccagtggtgcctatatatctcaatttctaccaac 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tagagatgcctgtaaagcaaatcaatccagtggtgcctatatatctcaatttctaccaac 232
Query: 396 atcacgtcgaattgttcaattttcaaatggcaagg 430
||||||||||| |||||||||||||||||||||||
Sbjct: 231 atcacgtcgaa-tgttcaattttcaaatggcaagg 198
>KJC_s21091
Length = 251
Score = 69.9 bits (35), Expect = 5e-12
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 154 catggcgatgatccttgcctgcttcctgatggaactgacgcttatgcattggccaagagg 213
||||| ||||||||||| | ||||||||||||||||| || ||||| | || |||| |
Sbjct: 4 catggagatgatccttgtgttcttcctgatggaactgatgcctatgcgcttgctaagaag 63
Query: 214 gctggacgctataagcagattaaacgcactgaagg 248
|| || ||||| ||||||||||| |||||||||||
Sbjct: 64 gcaggtcgctacaagcagattaagcgcactgaagg 98
>KJC_c08595
Length = 689
Score = 61.9 bits (31), Expect = 1e-09
Identities = 95/115 (82%), Gaps = 1/115 (0%)
Strand = Plus / Plus
Query: 134 ataaaattgactatatcatacatggcgatgatccttgcctgcttcctgatggaactgacg 193
|||| ||||| ||||| || ||||| ||||||||||| | |||| |||||||||||| |
Sbjct: 403 ataatattgattatataatccatggagatgatccttgtgttcttc-tgatggaactgatg 461
Query: 194 cttatgcattggccaagagggctggacgctataagcagattaaacgcactgaagg 248
| ||||| | || |||| ||| || ||||| ||||||||||| |||||||||||
Sbjct: 462 cctatgcgcttgctaagaaggcaggtcgctacaagcagattaagcgcactgaagg 516