Jatropha Genome Database

JcCB0211161.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0211161.10 + phase: 1 /partial
         (1152 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05192                                                             86   2e-16
KJC_c06104                                                             64   8e-10

>KJC_c05192 
          Length = 634

 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 149/183 (81%), Gaps = 1/183 (0%)
 Strand = Plus / Minus

                                                                        
Query: 921  gtccgtgaaggtgatcctgttacagagat-gcttttcattatcagaggaaggctagagag 979
            |||||||| |||||||| || ||||| || ||| || ||||||||||| ||  | |||||
Sbjct: 596  gtccgtgagggtgatcccgtgacagaaatagctatttattatcagaggcagattggagag 537

                                                                        
Query: 980  ctctactacaaatggaggccggacaggtttcttcaattcaattactttgagacctggtga 1039
             |||||||| || ||||| || || |||||||| || ||||||||||||| |||||| ||
Sbjct: 536  ttctactactaacggaggtcgtactggtttctttaactcaattactttgaaacctggaga 477

                                                                        
Query: 1040 tttttgcggtgaagagctgcttacgtgggcattgcttccaaaatctactctcaacttacc 1099
            |||||| || || |||||  |  | |||||  ||| |||||||||  |||||||||||||
Sbjct: 476  tttttgtggagaggagctattagcatgggctctgcatccaaaatcctctctcaacttacc 417

               
Query: 1100 ttc 1102
            |||
Sbjct: 416  ttc 414


>KJC_c06104 
          Length = 898

 Score = 63.9 bits (32), Expect = 8e-10
 Identities = 101/124 (81%)
 Strand = Plus / Plus

                                                                       
Query: 58  ttccaagattatacttgatttttcctttaagttctcagatgataaaaaccaatggagtag 117
           |||| ||||||||  ||||||||||||| |||||| | || || ||| | | ||||||||
Sbjct: 633 ttcccagattatatctgatttttcctttgagttctgaaatcattaaagcaactggagtag 692

                                                                       
Query: 118 tcacaaagactgcttgggcaggggctgcatataatctcctactatacatgttggctagtc 177
           |||| | ||| |||||||| || |||| ||||||| |  | |||||||||||||| || |
Sbjct: 693 tcacgaggacagcttgggctggagctgtatataatttgatgctatacatgttggcaagcc 752

               
Query: 178 atgt 181
           ||||
Sbjct: 753 atgt 756