Jatropha Genome Database

JcCB0207431.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0207431.30 - phase: 1 /pseudo/partial
         (308 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11309                                                            256   3e-68

>KJC_c11309 
          Length = 632

 Score =  256 bits (129), Expect = 3e-68
 Identities = 129/129 (100%)
 Strand = Plus / Minus

                                                                       
Query: 180 ggtgaaatcacatggatggcatgggcgcctaaggccattccaacaggtaatggacagggc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggtgaaatcacatggatggcatgggcgcctaaggccattccaacaggtaatggacagggc 213

                                                                       
Query: 240 ttggtattggcaacggctagtgttgacaagaaagtgaaattatgggcagcaccgtctctc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ttggtattggcaacggctagtgttgacaagaaagtgaaattatgggcagcaccgtctctc 153

                    
Query: 300 cattcggct 308
           |||||||||
Sbjct: 152 cattcggct 144



 Score =  254 bits (128), Expect = 1e-67
 Identities = 149/152 (98%), Gaps = 3/152 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgattcaaacggagcaactttgcattatgatcgactcagtttatccccc-aatggga 59
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 423 tcatgattcaaacggagcaactttgcattatgatcgactcagtttatccccccaatggga 364

                                                                       
Query: 60  agatactggcagcaacccacggctcaacattgcagtggttatgcgtggaaaccggaaatg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agatactggcagcaacccacggctcaacattgcagtggttatgcgtggaaaccggaaatg 304

                                           
Query: 120 ttctagacacagct-gaaaaag-cccatgacg 149
           |||||||||||||| ||||||| |||||||||
Sbjct: 303 ttctagacacagctagaaaaagacccatgacg 272