Jatropha Genome Database

JcCB0207431.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0207431.10 + phase: 2 /partial
         (406 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03276                                                             92   1e-18

>KJC_c03276 
          Length = 947

 Score = 91.7 bits (46), Expect = 1e-18
 Identities = 124/150 (82%)
 Strand = Plus / Plus

                                                                       
Query: 13  taaatggggctatgagaaaattcaccatgtccaccatcaatacactgctcctataggatt 72
           |||||||||||||||||||||||| | |||||| ||  ||||  ||||||| || || ||
Sbjct: 248 taaatggggctatgagaaaattcatcgtgtccatcacgaatatgctgctccaattggttt 307

                                                                       
Query: 73  ggcagcaccatatgcacactgggctgagattttgattcttggatttcctgcatttcttgg 132
            || ||||||||||||||||||||||| || ||||| || ||| ||||  | ||||||||
Sbjct: 308 tgctgcaccatatgcacactgggctgaaatattgatcctgggaattccgtcttttcttgg 367

                                         
Query: 133 tcctgcattagttcctggccacataatcac 162
            || ||| | |||||||| ||||| |||||
Sbjct: 368 gccagcaatggttcctgggcacatgatcac 397



 Score = 77.8 bits (39), Expect = 2e-14
 Identities = 100/119 (84%), Gaps = 1/119 (0%)
 Strand = Plus / Plus

                                                                       
Query: 242 aaatatattccattctatggaggtgcagagtaccatgactaccatcactgtgtgggtgcc 301
           |||||||||||||| ||||| |||||||| |||||||| |||||||| | ||| || |  
Sbjct: 477 aaatatattccattttatggtggtgcagattaccatgattaccatcattatgttggaggg 536

                                                                      
Query: 302 caaagccaaagcaactttgcgtcaattttcacttattgtgattatatttatggaactga 360
           || ||||| ||||||||||| ||| | ||||| || ||||| | |||||||||||||||
Sbjct: 537 cagagccagagcaactttgcttcagtgttcacctactgtgact-tatttatggaactga 594