Jatropha Genome Database

JcCB0205061.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0205061.10 + phase: 0 
         (288 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08315                                                            436   e-122
KJC_c05446                                                             54   2e-07

>KJC_c08315 
          Length = 582

 Score =  436 bits (220), Expect = e-122
 Identities = 220/220 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   cttcaaaacatagttggtgccattactggcgacagtaatggcagcaagaagataaaatgt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cttcaaaacatagttggtgccattactggcgacagtaatggcagcaagaagataaaatgt 60

                                                                       
Query: 64  gttagtggtgagtgcaaaaagatcacaggcagtgttgttttgatgaaaaagaatgtttta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gttagtggtgagtgcaaaaagatcacaggcagtgttgttttgatgaaaaagaatgtttta 120

                                                                       
Query: 124 gacttcaatgattttcatgcttcacttcttgatcgtgttcatgagttgtttggccatgga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gacttcaatgattttcatgcttcacttcttgatcgtgttcatgagttgtttggccatgga 180

                                                   
Query: 184 gtttctctgcaactcattagttctgttactagtgagtctg 223
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtttctctgcaactcattagttctgttactagtgagtctg 220


>KJC_c05446 
          Length = 717

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                       
Query: 103 ttgatgaaaaagaatgttttagacttcaatgattttcatgcttcacttcttgatcgtgtt 162
           |||||||| ||||| ||||| |||||||||||| ||   ||||||  | |||||||  ||
Sbjct: 646 ttgatgaagaagaacgttttggacttcaatgatgttacagcttcatgttttgatcggatt 587

                          
Query: 163 catgagttgtttggc 177
           |||||||||||||||
Sbjct: 586 catgagttgtttggc 572