Jatropha Genome Database

JcCB0203341.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0203341.10 + phase: 0 /partial
         (381 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07798                                                            593   e-169

>KJC_c07798 
          Length = 1018

 Score =  593 bits (299), Expect = e-169
 Identities = 330/339 (97%), Gaps = 1/339 (0%)
 Strand = Plus / Minus

                                                                       
Query: 23  gatcaataacgaaggaaggccgtgggcaaggcaaaaggtttggagttgaccaatatgaaa 82
           ||||||||||||||||||| |||| |||||||||| ||||||||||||| ||||||||||
Sbjct: 338 gatcaataacgaaggaaggacgtgagcaaggcaaa-ggtttggagttgagcaatatgaaa 280

                                                                       
Query: 83  tgggacccttttcaagagatccccagctgttggaaaatttgaaattaggggaaggtgcaa 142
           || || |||| |||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 279 tgcgaaccttctcaagagatcgccagctgttggaaaatctgaaattaggggaaggtgcaa 220

                                                                       
Query: 143 agggagtgtatatctcaatagatgtggactgccttgaccctgcatttgctcctggtgtat 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 agggagtgtatatctcaatagatgtggactgccttgaccctgcatttgctcctggtgtat 160

                                                                       
Query: 203 ctcacattgagcctggtggtctctctttccgtgatgtactaaacatcctccacaaccttc 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ctcacattgagcctggtggtctctctttccgtgatgtactaaacatcctccacaaccttc 100

                                                                       
Query: 263 aagctgatgttgttgcagcagatgtggtagaattcaatccgcaacgtgacactgttgatg 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  aagctgatgttgttgcagcagatgtggtagaattcaatccgcaacgtgacactgttgatg 40

                                                  
Query: 323 ggatgactgctatggttgctgccaagctggtaagagaac 361
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  ggatgactgctatggttgctgccaagctggtaagagaac 1