Jatropha Genome Database

JcCB0201851.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0201851.20 + phase: 0 
         (1335 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09795                                                             52   4e-06

>KJC_c09795 
          Length = 468

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                        
Query: 1096 attgattataaaggtcaacattatgagtttttaccatttggtgctgggaggagaggttgt 1155
            ||||||| |||||| ||| ||| ||||||| | |||||||| ||||| || |||||||||
Sbjct: 257  attgattttaaaggacaaaattttgagtttctgccatttggagctggtagaagaggttgt 198

              
Query: 1156 cc 1157
            ||
Sbjct: 197  cc 196