Jatropha Genome Database

JcCB0200451.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0200451.10 - phase: 0 
         (1116 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03738                                                             80   1e-14
KJC_c05415                                                             68   5e-11

>KJC_c03738 
          Length = 1037

 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 154/192 (80%)
 Strand = Plus / Minus

                                                                       
Query: 400 aagccttggatgggccaacttgctgcagtcgcttgtttgtctctggctgctaaagtggag 459
           ||||| ||||||  |||||| || || ||||||||| |||| || || || || || || 
Sbjct: 863 aagccatggatgacccaactcgccgccgtcgcttgtctgtcccttgccgccaaggtagaa 804

                                                                       
Query: 460 gaaacccaagtgcctcttcttctggacttgcaagtggaggaatcaaaatatgtttttgaa 519
           || ||| | |||||||||||  ||||| | || ||||||||    |||||||| ||||| 
Sbjct: 803 gagaccgaggtgcctcttctattggacctccaggtggaggacagtaaatatgtgtttgag 744

                                                                       
Query: 520 gctaagactatgaagagaatggagcttctggtgctctctactcttcaatggaggatgaat 579
           || || |||||  ||||||||||| || |||||||||||||||| | |||||| ||||||
Sbjct: 743 gccaaaactattcagagaatggagattttggtgctctctactctccgatggagaatgaat 684

                       
Query: 580 cctgtgactcca 591
           ||||| ||||||
Sbjct: 683 cctgtaactcca 672


>KJC_c05415 
          Length = 667

 Score = 67.9 bits (34), Expect = 5e-11
 Identities = 124/154 (80%)
 Strand = Plus / Minus

                                                                       
Query: 443 tggctgctaaagtggaggaaacccaagtgcctcttcttctggacttgcaagtggaggaat 502
           ||||||| ||||| || ||||| ||||| ||||||||| | ||| | |||||||||||  
Sbjct: 623 tggctgcaaaagttgaagaaactcaagttcctcttcttttagacctccaagtggaggaca 564

                                                                       
Query: 503 caaaatatgtttttgaagctaagactatgaagagaatggagcttctggtgctctctactc 562
           | |||||| | ||||||||||| || ||  | |||||||||||| | ||||| ||||| |
Sbjct: 563 ccaaatatatgtttgaagctaaaacaattcaaagaatggagcttttagtgctttctacac 504

                                             
Query: 563 ttcaatggaggatgaatcctgtgactccaatttc 596
           |  |||||| |||| || | ||||||||| ||||
Sbjct: 503 taaaatggaagatgcattcagtgactccactttc 470