Jatropha Genome Database

JcCB0197871.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0197871.20 + phase: 0 /TE/partial
         (201 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_s20070                                                            113   2e-25
KJC_c07048                                                            111   6e-25

>KJC_s20070 
          Length = 353

 Score =  113 bits (57), Expect = 2e-25
 Identities = 57/57 (100%)
 Strand = Plus / Plus

                                                                    
Query: 1   tcacatgtgttatcagcagaagagattgaaattcagccggatctcacttatgaagaa 57
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tcacatgtgttatcagcagaagagattgaaattcagccggatctcacttatgaagaa 295


>KJC_c07048 
          Length = 450

 Score =  111 bits (56), Expect = 6e-25
 Identities = 91/102 (89%), Gaps = 3/102 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacatgtgttatcagcagaagagattgaaattcagccggatctcacttat---gaagaa 57
           |||||||||||||||||||| |||||||||||||||||||||||||| |||   ||||||
Sbjct: 325 tcacatgtgttatcagcagacgagattgaaattcagccggatctcacgtatgaagaagaa 384

                                                     
Query: 58  ccaattcagatcttagccagagaaattaaagaattacggaac 99
           ||| |||| ||| |||||| ||||| ||||||||| ||||||
Sbjct: 385 ccagttcaaatcctagccaaagaaactaaagaattgcggaac 426