Jatropha Genome Database

JcCB0189361.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0189361.20 - phase: 0 /pseudo/partial
         (231 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04992                                                            103   2e-22

>KJC_c04992 
          Length = 713

 Score =  103 bits (52), Expect = 2e-22
 Identities = 127/152 (83%)
 Strand = Plus / Plus

                                                                       
Query: 22  gagctacgtagagatatattaagagaagtgaaatttgcagggattgtaccggtgccggtg 81
           |||||||| ||||| |||||||||||||| || || || || || ||||| || || |||
Sbjct: 506 gagctacgaagagaaatattaagagaagtaaagttggcgggaatagtaccagtaccagtg 565

                                                                       
Query: 82  gcggcgatcactgctggttcggcttgttgaagtaaccattcgatggtttccccgtcggat 141
           || ||||  || || ||||| |||||||| | ||||||||| || ||||| ||||| |||
Sbjct: 566 gcagcgacgacggcaggttcagcttgttgcaataaccattcaatagtttcgccgtctgat 625

                                           
Query: 142 ttgtgaccgagttcacgagttagttggaaaac 173
           ||||| |||||||||||||| |||||||||||
Sbjct: 626 ttgtggccgagttcacgagtgagttggaaaac 657