Jatropha Genome Database

JcCB0188331.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0188331.10 + phase: 2 /pseudo/partial
         (418 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06943                                                             58   2e-08

>KJC_c06943 
          Length = 939

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 80/97 (82%)
 Strand = Plus / Minus

                                                                       
Query: 159 cagacgaagacgcacatgtgattggtgattgtgtcaagtatttcctccgtgagttgccat 218
           |||| ||||| || |||||  ||||||||||||||||| || ||||  | ||| |||| |
Sbjct: 174 cagatgaagatgctcatgttgttggtgattgtgtcaagcatgtcctaagggagctgccct 115

                                                
Query: 219 cgtctccagtccctgcatcttgctgcaatgcactgct 255
           | |||||||| || ||||||||||||| |||| ||||
Sbjct: 114 cctctccagttccagcatcttgctgcactgcattgct 78