Jatropha Genome Database

JcCB0183891.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0183891.10 - phase: 0 /partial
         (1033 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04826                                                            319   8e-87

>KJC_c04826 
          Length = 460

 Score =  319 bits (161), Expect = 8e-87
 Identities = 181/185 (97%), Gaps = 2/185 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtacatgctccatttgccttgctgcctgcaacattcccggaaagtcactggaattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atggtacatgctccatttgccttgctgcctgcaacattcccggaaagtcactggaattta 330

                                                                       
Query: 61  gcttgtgaggttgcccccatattcaatgaacttgtcgatcgtgtgagtttggatggaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gcttgtgaggttgcccccatattcaatgaacttgtcgatcgtgtgagtttggatggaaaa 390

                                                                       
Query: 121 tttc-ttcaagactcattgtcgagaacaaagaaagtagatgtttttacatcaagg-cttt 178
           |||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||
Sbjct: 391 tttctttcaagactcattgtcgagaacaaagaaagtagattgttttacatcaaggtcttt 450

                
Query: 179 tagat 183
           |||||
Sbjct: 451 tagat 455