Jatropha Genome Database

JcCB0176301.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0176301.20 + phase: 0 
         (411 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05967                                                            194   1e-49

>KJC_c05967 
          Length = 565

 Score =  194 bits (98), Expect = 1e-49
 Identities = 209/246 (84%)
 Strand = Plus / Minus

                                                                       
Query: 88  gaacaagataggtacctgcccatcgccaatattagccggatcatgaagaaggctcttcct 147
           ||||| |||||||||||||| || ||||| || ||| ||||||||||||||||| | |||
Sbjct: 417 gaacaggataggtacctgcctattgccaacataagcaggatcatgaagaaggctttgcct 358

                                                                       
Query: 148 gcaaatggtaagatcgctaaggatgctaaggaaactgttcaggaatgcgtctctgagttt 207
           || ||||| || || ||||| ||||||||||| ||||| |||||||| |||||||| |||
Sbjct: 357 gccaatggaaaaattgctaaagatgctaaggatactgtgcaggaatgtgtctctgaattt 298

                                                                       
Query: 208 atcagtttcatcaccagcgaggcgagtgataagtgtcagagagagaagaggaagacaatc 267
           || || || || ||||||||||||||||||||||||||||  ||||| || |||||||||
Sbjct: 297 attagctttattaccagcgaggcgagtgataagtgtcagaaggagaaaagaaagacaatc 238

                                                                       
Query: 268 aatggtgatgatttgctatgggctatggcgacgttaggttttgaggattatatcgatccg 327
           ||||| ||||||||| | ||||| ||||| ||  |||| |||||||| ||||| || || 
Sbjct: 237 aatggagatgatttgttgtgggcgatggcaactctaggctttgaggactatattgaacca 178

                 
Query: 328 cttaag 333
           ||||||
Sbjct: 177 cttaag 172