Jatropha Genome Database

JcCB0176301.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0176301.10 + phase: 0 /pseudo/partial
         (369 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06474                                                            646   0.0  

>KJC_c06474 
          Length = 482

 Score =  646 bits (326), Expect = 0.0
 Identities = 333/334 (99%), Gaps = 1/334 (0%)
 Strand = Plus / Minus

                                                                       
Query: 36  ggcaaagttacacattgagagtggtgatatccaaggaattattgatccttcgctacgcga 95
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ggcaaagttacacattgagagtggtgatatccaaggaattattgatccttcgctacgcga 349

                                                                       
Query: 96  tgagtatgatatacaatcaatgtggaagatagcagagaaagctttaatgtgcgtccagcc 155
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tgagtatgatatacaatcaatgtggaagatagcagagaaagctttaatgtgcgtccagcc 289

                                                                       
Query: 156 tcacggtcacatgaggccatcaatttcagaagtccttaaggagattcaagatgctatttt 215
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tcacggtcacatgaggccatcaatttcagaagtccttaaggagattcaagatgctatttt 229

                                                                       
Query: 216 aattgaaaaggaatctatgacagtgagagaaggtaactccgatgacttgtcgaggacttc 275
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 aattgaaaaggaatctatgacagtgagagaaggtaactccgatgacttgtcgaggacttc 169

                                                                       
Query: 276 tgcccattcttcactgaacttgggttctttggaatttggtggaactgagaattacttatc 335
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 168 tgcccattcttcactgaacttgggttctttggaatttggtggaactgagaattacttat- 110

                                             
Query: 336 ccttgatgactcagtggcacaaccaactgctaga 369
           ||||||||||||||||||||||||||||||||||
Sbjct: 109 ccttgatgactcagtggcacaaccaactgctaga 76