Jatropha Genome Database
- JcCB0175201.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0175201.10 - phase: 0
(1287 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c02970 985 0.0
KJC_c06627 652 0.0
KJC_c11690 650 0.0
KJC_c05899 101 4e-21
>KJC_c02970
Length = 694
Score = 985 bits (497), Expect = 0.0
Identities = 518/521 (99%), Gaps = 3/521 (0%)
Strand = Plus / Minus
Query: 10 gctgaagtctcgaggatgaaacctcctcttgttccacttgggaccttgatcggtcgtgag 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gctgaagtctcgaggatgaaacctcctcttgttccacttgggaccttgatcggtcgtgag 459
Query: 70 cttaggaatgagaaggttgagaaaccttttctgaagtatggacaggctgctttggcaaag 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cttaggaatgagaaggttgagaaaccttttctgaagtatggacaggctgctttggcaaag 399
Query: 130 aagggagaggattacttcctgataaaacccgactgccagagaattcaaggggatccttca 189
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 398 aagggagaggattacttcctgataaa-cccgactgccagagaattca-ggggatccttca 341
Query: 190 acatcattttctgtctttgcgatttttgatggacataatggtatatcagctgccatcttt 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 acatcattttctgtctttgcgatttttgatggacataatggtatatcagctgccatcttt 281
Query: 250 gctaaggaaaacttattggataatgttctgagtgcaattccccaggaaattagtagggaa 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gctaaggaaaacttattggataatgttctgagtgcaattccccaggaaattagtagggaa 221
Query: 310 gagtggcttcaagcccttcctcgagctctagttgcaggctttgtgaaaactgacatagaa 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gagtggcttcaagcccttcctcgagctctagttgcaggctttgtgaaaactgacatagaa 161
Query: 370 tttcagcaaagacgggagacttctgggacaacagtaacatttgtcgtgatagatgggtgg 429
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 tttcagcaaagac-ggagacttctgggacaacagtaacatttgtcgtgatagatgggtgg 102
Query: 430 actgtgactgtcgcttctgtgggggattcacgatgcatcttggatactcagggaggtgta 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 actgtgactgtcgcttctgtgggggattcacgatgcatcttggatactcagggaggtgta 42
Query: 490 gtttcccttttgacagttgatcacaggctagaagagaatgt 530
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 gtttcccttttgacagttgatcacaggctagaagagaatgt 1
>KJC_c06627
Length = 512
Score = 652 bits (329), Expect = 0.0
Identities = 350/353 (99%), Gaps = 3/353 (0%)
Strand = Plus / Plus
Query: 1 atgagccaggctgaagtctcgaggatgaaacctcctcttgttccacttgggaccttgatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 atgagccaggctgaagtctcgaggatgaaacctcctcttgttccacttgggaccttgatc 222
Query: 61 ggtcgtgagcttaggaatgagaaggttgagaaaccttttctgaagtatggacaggctgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ggtcgtgagcttaggaatgagaaggttgagaaaccttttctgaagtatggacaggctgct 282
Query: 121 ttggcaaagaagggagaggattacttcctgataaaacccgactgccagagaattcaaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttggcaaagaagggagaggattacttcctgataaaacccgactgccagagaattcaaggg 342
Query: 181 gatccttcaacatcattttctgtctttgcgatttttgatggacataatggtatatcagct 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gatccttcaacatca-tttctgtctttgcgatttttgatggacataatggtatatcagct 401
Query: 241 gccatctttgctaaggaaaacttattggataatgttctgagtgcaattccccaggaaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 402 gccatctttgctaaggaaaacttattggataatgttctgagtgcaattccccagg-aatt 460
Query: 301 agtagggaagagtggcttcaagcccttcctcgagctctagttgcaggctttgt 353
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 agta-ggaagagtggcttcaagcccttcctcgagctctagttgcaggctttgt 512
>KJC_c11690
Length = 339
Score = 650 bits (328), Expect = 0.0
Identities = 338/340 (99%), Gaps = 1/340 (0%)
Strand = Plus / Minus
Query: 607 cccttgcgatgctggcctggtggcttgtgtctttctaggtcaattggagatacggatgtt 666
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cccttgcgatactggcctggtggcttgtgtctttctaggtcaattggagatacggatgtt 280
Query: 667 ggagagttcattgtcccaatacctcatgttaagcaagtgaagctatcagatgctggggga 726
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 279 ggagagttcattgtcccaatacctcatgttaagcaagtgaagctatcagatgctgggg-a 221
Query: 727 agactaattattgcttctgatggtatctgggacgctttatcctctgatatggctgcaaag 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 agactaattattgcttctgatggtatctgggacgctttatcctctgatatggctgcaaag 161
Query: 787 tcatgtcggggtttacctgcagagattgctgccaagttggtggttaaggaggctttaagg 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 tcatgtcggggtttacctgcagagattgctgccaagttggtggttaaggaggctttaagg 101
Query: 847 tcaaggggactgaaggatgatacaacatgccttgttgttgatattatcccatctgacctt 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 tcaaggggactgaaggatgatacaacatgccttgttgttgatattatcccatctgacctt 41
Query: 907 cccgtcttacctcctataccaaggaagaagcaaaatatgc 946
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 cccgtcttacctcctataccaaggaagaagcaaaatatgc 1
>KJC_c05899
Length = 550
Score = 101 bits (51), Expect = 4e-21
Identities = 123/147 (83%)
Strand = Plus / Minus
Query: 639 ttctaggtcaattggagatacggatgttggagagttcattgtcccaatacctcatgttaa 698
|||||| ||||||||||| | ||||||||||||||| || || ||||| || |||| ||
Sbjct: 451 ttctagatcaattggagacatggatgttggagagtttatagttccaattccatatgtcaa 392
Query: 699 gcaagtgaagctatcagatgctgggggaagactaattattgcttctgatggtatctggga 758
|||||||||||||||| |||| || || || || || |||||||||||||| ||||||||
Sbjct: 391 gcaagtgaagctatcaaatgcaggtggcaggcttataattgcttctgatggaatctggga 332
Query: 759 cgctttatcctctgatatggctgcaaa 785
||| | ||||| || ||||| |||||
Sbjct: 331 tgctctttcctcagaaatggcagcaaa 305