Jatropha Genome Database

JcCB0174071.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0174071.10 - phase: 0 /pseudo
         (475 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04535                                                            339   4e-93

>KJC_c04535 
          Length = 823

 Score =  339 bits (171), Expect = 4e-93
 Identities = 221/231 (95%), Gaps = 10/231 (4%)
 Strand = Plus / Minus

                                                                       
Query: 250 accgatgatgttattgatgggattgatattgccttggggaaatatgtcattactctttca 309
           |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 823 accgatgatgttattgatgg-attgatattgccttggggaa-tatgtcattactctttca 766

                                                                       
Query: 310 tcagagggaagtattttaagagcatggaacctacctgatggtcagatggtgtgggaatct 369
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 765 tcagagg-aagtattttaagagcatggaacctacctgatggtcagatggtgtgggaatc- 708

                                                                       
Query: 370 tttcttcaaggcccaaatcactcgaagtcattgttgttggtgcc-----gcttgaaaagt 424
           ||||||||||||||||||||||||||||||||||||||||||||     ||||| |||||
Sbjct: 707 tttcttcaaggcccaaatcactcgaagtcattgttgttggtgccggcaagcttg-aaagt 649

                                                              
Query: 425 tgacaaggacaatgtgattcttgtgtttggtaagggatgtctccatgctgt 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tgacaaggacaatgtgattcttgtgtttggtaagggatgtctccatgctgt 598