Jatropha Genome Database

JcCB0173711.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0173711.10 + phase: 2 /partial
         (523 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09170                                                            254   2e-67
KJC_c10100                                                            240   3e-63

>KJC_c09170 
          Length = 237

 Score =  254 bits (128), Expect = 2e-67
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                       
Query: 396 ggaaggctggtgaaacccatggaacagttggaatttacatttctgttggtgatggatcag 455
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggaaggctggtgaaacccatggaacagttggaatttacatttctgttggtgatggatcag 60

                                                                       
Query: 456 gacatggacaggcatggggctgcgacttgagttatgattatgttaaaataaatgcagagt 515
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gacatggacaggcatggggctgcgacttgagttatgattatgttaaaataaatgcagagt 120

                   
Query: 516 acacaact 523
           ||||||||
Sbjct: 121 acacaact 128


>KJC_c10100 
          Length = 674

 Score =  240 bits (121), Expect = 3e-63
 Identities = 124/125 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggctagtgggttatctggatcaacctcaatatcatctatcgaatgcagtgaggcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tttggctagtgggttatctggatcaacctcaatatcatctatcgaatgcagtgaggcaag 66

                                                                       
Query: 61  acaacttcaagcatgccttgatgcagtaatgcaagctcttgcaaaatcagtagcttggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  acaacttcaagcatgccttgatgcagtaatgcaagctcttgcaaaatcagtagcttggga 6

                
Query: 121 tggag 125
            ||||
Sbjct: 5   gggag 1