Jatropha Genome Database

JcCB0173481.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0173481.10 - phase: 1 /partial
         (485 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08389                                                            613   e-175

>KJC_c08389 
          Length = 485

 Score =  613 bits (309), Expect = e-175
 Identities = 319/321 (99%), Gaps = 1/321 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggtggttttgtgaa-tggaacatgggcaaagttgaagatggaagtgacagtcgtgct 59
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttggtggttttgtgaaatggaacatgggcaaagttgaagatggaagtgacagtcgtgct 262

                                                                       
Query: 60  gttcaagttgttgatgacaagcactgggatgatcttgttattattattgctgtggtaagt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcaagttgttgatgacaagcactgggatgatcttgttattattattgctgtggtaagt 202

                                                                       
Query: 120 tcacggcagaaagaaacaagtagtaccacaggaatgcgtgagactgttgaaactagcctg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacggcagaaagaaacaagtagtaccacaggaatgcgtgagactgttgaaactagcctg 142

                                                                       
Query: 180 cttttgcaacacagagctaaggaggttgtaccaaaacgcattataaaaatggaagaggcc 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 141 cttttgcaacacagagctaaggaggttgtaccaaaacgcattataaaaatggaaaaggcc 82

                                                                       
Query: 240 ataaagaaccgtgattttgcatcttttgcacaattaacctgtgctgatagtaatcagttc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  ataaagaaccgtgattttgcatcttttgcacaattaacctgtgctgatagtaatcagttc 22

                                
Query: 300 cacgctgtctgcttagataca 320
           |||||||||||||||||||||
Sbjct: 21  cacgctgtctgcttagataca 1