Jatropha Genome Database
- JcCB0173361.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0173361.10 + phase: 0
(576 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c08135 502 e-142
KJC_c09995 424 e-118
KJC_c03453 400 e-111
KJC_c04160 178 1e-44
>KJC_c08135
Length = 379
Score = 502 bits (253), Expect = e-142
Identities = 253/253 (100%)
Strand = Plus / Minus
Query: 8 aggaaatgctaagcggggacactgctgtaattgcggaaactggagattcatggttcaact 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aggaaatgctaagcggggacactgctgtaattgcggaaactggagattcatggttcaact 194
Query: 68 gtcagaaactccgcctcccggagaattgtgggtatgaattccagatgcagtatggatcta 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gtcagaaactccgcctcccggagaattgtgggtatgaattccagatgcagtatggatcta 134
Query: 128 ttggctggtcagttggtgctactcttggatatgctcaggcagccagaacgaagcgcgtga 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ttggctggtcagttggtgctactcttggatatgctcaggcagccagaacgaagcgcgtga 74
Query: 188 ttgcttgcattggtgatggaagtttccaggttacggctcaggatatttcaacaatgattc 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 ttgcttgcattggtgatggaagtttccaggttacggctcaggatatttcaacaatgattc 14
Query: 248 gattgggacaaaa 260
|||||||||||||
Sbjct: 13 gattgggacaaaa 1
>KJC_c09995
Length = 339
Score = 424 bits (214), Expect = e-118
Identities = 228/230 (99%), Gaps = 2/230 (0%)
Strand = Plus / Minus
Query: 348 ttacactggccttgtcaatgcaatccataatgatgaaggcaaatgctggacagcaaaggt 407
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttacactggccttgtcaatgcaatccataatgatgaaggcaaatgctggacagcaaagg- 281
Query: 408 ccgaacagaggaac-aactaagagaagcaattgcaacagcaactggagaacaaaagggtt 466
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ccgaacagaggaacgaactaagagaagcaattgcaacagcaactggagaacaaaagggtt 221
Query: 467 ctctatgtttcatcgaagttttggtgcacaaggatgatactagtaaagagctgctggaat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ctctatgtttcatcgaagttttggtgcacaaggatgatactagtaaagagctgctggaat 161
Query: 527 ggggatccagagtttctgcagctaacagccgtcctccaaatccacaataa 576
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 ggggatccagagtttctgcagctaacagccgtcctccaaatccacaataa 111
>KJC_c03453
Length = 980
Score = 400 bits (202), Expect = e-111
Identities = 240/246 (97%), Gaps = 5/246 (2%)
Strand = Plus / Plus
Query: 8 aggaaatgctaagcggggacactgctgtaattgcggaaactggagattcatggttcaact 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aggaaatgctaagcggggacactgctgtaattgcggaaactggagattcatggttcaact 794
Query: 68 gtcagaaactccgcctcccggagaattgtgggtatgaattccagatgcagtatggatcta 127
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 795 gtcagaaactccgcctcccggagaattgtgggtatgaactccagatgcagtatggatcta 854
Query: 128 ttggctggtcagttggtgctactcttggatatgctcaggcagccagaacgaagcgcgtga 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ttggctggtcagttggtgctactcttggatatgctcaggcagccagaacgaagcgcgtga 914
Query: 188 ttgcttgcattggtgatgg-aagtttcc-aggttacggctc-agga-tatttcaac-aat 242
||||||||||||||||||| |||||||| |||||||||||| |||| ||||||||| |||
Sbjct: 915 ttgcttgcattggtgatggtaagtttccgaggttacggctcgaggattatttcaactaat 974
Query: 243 gattcg 248
||||||
Sbjct: 975 gattcg 980
>KJC_c04160
Length = 532
Score = 178 bits (90), Expect = 1e-44
Identities = 252/304 (82%), Gaps = 4/304 (1%)
Strand = Plus / Minus
Query: 98 ggtatgaattccagatgcagtatggatctattggctggtcagttggtgctactcttggat 157
||||||| ||||| ||||| |||||||| ||||| |||||||| ||||| |||||||| |
Sbjct: 473 ggtatgagttccaaatgcaatatggatcaattggatggtcagtcggtgcaactcttgggt 414
Query: 158 atgctcaggcag--ccagaacgaagcgcgtgattgcttgcattggtgatggaagtttcca 215
|||||||||| | ||||| |||||| ||||||||||| ||||||||||| || || ||
Sbjct: 413 atgctcaggctgtgccaga--gaagcgtgtgattgcttgtattggtgatggtagctttca 356
Query: 216 ggttacggctcaggatatttcaacaatgattcgattgggacaaaagactataatattcct 275
||| || ||||| ||||||||||||||| | |||| ||||| | |||||| || ||| |
Sbjct: 355 ggtgactgctcaagatatttcaacaatgctgcgatgtggacagaggactatcatcttctt 296
Query: 276 cattaacaatgggggttatacaattgaagtagagattcacgatggcccctacaatgtaat 335
|| |||||||| || || || ||||| || ||||| || |||||||| |||||||| ||
Sbjct: 295 gatcaacaatggtggatacaccattgaggttgagatccatgatggcccatacaatgtgat 236
Query: 336 aaagaactgggattacactggccttgtcaatgcaatccataatgatgaaggcaaatgctg 395
||||||||| | ||||||||| | | |||||||||| |||| |||||||||||||||
Sbjct: 235 caagaactggaactacactggcttgattgatgcaatccacaatggtgaaggcaaatgctg 176
Query: 396 gaca 399
||||
Sbjct: 175 gaca 172