Jatropha Genome Database

JcCB0171671.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0171671.10 + phase: 1 /pseudo/partial
         (664 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03927                                                            117   4e-26

>KJC_c03927 
          Length = 1134

 Score =  117 bits (59), Expect = 4e-26
 Identities = 245/307 (79%)
 Strand = Plus / Plus

                                                                       
Query: 285 tacattcctctcacaatactggccgttcctgcttcagtactcacgcttgggggtggttac 344
           ||||||||||| ||| |  |||| ||||| || ||||| || || ||||| ||||| || 
Sbjct: 329 tacattcctctgacagttttggcagttccagcatcagtgcttactcttggtggtggatat 388

                                                                       
Query: 345 ctttttgggttgcctgtaggatttgttgctgattctattggtgccaccattggtgcaact 404
           || |||||||||||||| || |||||||||||||||||||||||||||||||| |||   
Sbjct: 389 ctctttgggttgcctgtgggctttgttgctgattctattggtgccaccattggggcaggg 448

                                                                       
Query: 405 gctgcattccttgttggtagaacaattggaagatcatatgttatgtccaagttaaagaat 464
           ||||| |||||| | || ||||| || || ||||| | |||| | |||||||| ||| | 
Sbjct: 449 gctgctttccttctgggaagaacgatcggtagatcttttgttgtttccaagttgaaggac 508

                                                                       
Query: 465 tatcccaagtttgaagctgttgcaattgcagttcggaaatctggttttaagatagttttg 524
           |||||  |||||    | |||||||||||| | |||| |||||| |||||||| ||| ||
Sbjct: 509 tatccacagtttaggtcggttgcaattgcaatccggagatctggctttaagattgttctg 568

                                                                       
Query: 525 cttctacggcttgttcctttacttccatttaacatgctgaactacctcctgtctgtaact 584
           || || || |||||||| || || || || | |||| |||| ||||| ||||| || |||
Sbjct: 569 ctgcttcgacttgttccattgctacctttcagcatgttgaattacctgctgtccgttact 628

                  
Query: 585 ccagttc 591
           || ||||
Sbjct: 629 cctgttc 635