Jatropha Genome Database

JcCB0164521.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0164521.20 - phase: 0 /partial
         (1611 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06953                                                            109   2e-23
KJC_c06593                                                             72   5e-12
KJC_c05223                                                             66   3e-10

>KJC_c06953 
          Length = 487

 Score =  109 bits (55), Expect = 2e-23
 Identities = 161/196 (82%), Gaps = 7/196 (3%)
 Strand = Plus / Minus

                                                                       
Query: 71  ctgatttcatttcaatatatcaaagtcttcctgattatctcatgtcctgcttagattatt 130
           |||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct: 482 ctgattgcatttcaatatatcaaagtcttcctgattatctcgtgtcctgtttagactatt 423

                                                                       
Query: 131 gtgctatccttgcca-----aga-gatgtcctatggtgagggataaaatagttcggcttt 184
           |||||||| || | |     ||| | | || ||| | || || |||||| |||| |||||
Sbjct: 422 gtgctatcgttactacttggagacgctttcttatagggaagggtaaaatggttcagcttt 363

                                                                       
Query: 185 tattggctgaatctctaataccnnnnnnngaaggggaactcatagataatacagcagata 244
           ||||||||||||||||||||||       | ||| ||| |||||||||| | |||| |||
Sbjct: 362 tattggctgaatctctaataccagaaaagg-aggagaaatcatagataacatagcaaata 304

                           
Query: 245 acattattgaggagtt 260
           ||||||||||||||||
Sbjct: 303 acattattgaggagtt 288



 Score = 69.9 bits (35), Expect = 2e-11
 Identities = 74/88 (84%), Gaps = 1/88 (1%)
 Strand = Plus / Minus

                                                                       
Query: 330 attatgtcttgttgaggtggacgaagtggcnnnnnnngctaaagccgcgagtttacctgt 389
           ||||||||||||||||||||| |||||||        |||||||| |||| |||||||||
Sbjct: 191 attatgtcttgttgaggtggatgaagtgg-aatttttgctaaagctgcgaatttacctgt 133

                                       
Query: 390 acgggctataatagaagatgatgggaag 417
            ||||||||||||||| ||||| |||||
Sbjct: 132 tcgggctataatagaacatgatcggaag 105


>KJC_c06593 
          Length = 505

 Score = 71.9 bits (36), Expect = 5e-12
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                       
Query: 512 tttctcgggcctatatagcaactatttgcaaattgcaaaatctattggtgttaaatttgg 571
           |||||||||||| ||| | |||||||||||| |||||| || ||||||||||| ||||||
Sbjct: 68  tttctcgggcctctatggaaactatttgcaagttgcaatatttattggtgttacatttgg 127

               
Query: 572 atgg 575
           ||||
Sbjct: 128 atgg 131


>KJC_c05223 
          Length = 680

 Score = 65.9 bits (33), Expect = 3e-10
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 958 gcagccatcatgaagatggaaaatcttatctccttgtcact 998
           |||||||||| |||||||||||||||| |||||||||||||
Sbjct: 615 gcagccatcacgaagatggaaaatcttgtctccttgtcact 575