Jatropha Genome Database

JcCB0162471.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0162471.10 + phase: 1 /pseudo/partial
         (377 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06435                                                            285   4e-77

>KJC_c06435 
          Length = 1282

 Score =  285 bits (144), Expect = 4e-77
 Identities = 195/208 (93%), Gaps = 13/208 (6%)
 Strand = Plus / Plus

                                                                        
Query: 1    atttaatgtcactgacccaatcgtggtagttaatcttgggggg-aatgcttacat-atat 58
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 1078 atttaatgtcactgacccaatcgtggtagttaatcttgggggggaatgcttacattatat 1137

                                                                        
Query: 59   tgtctaggtcttgtcaaaagtggagatgtaaatatcatcgga--------catgacgggt 110
            ||||||||||||||||||||||||||||||||||||||||||        ||||||||||
Sbjct: 1138 tgtctaggtcttgtcaaaagtggagatgtaaatatcatcggacaaaatttcatgacgggt 1197

                                                                        
Query: 111  tatcttattgttttcaatcgtgaaaggaacgtgttgggttggaagccatcaaactgttat 170
            ||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||
Sbjct: 1198 tatcttattgttttcaatcgtgaaagg-acgtgttgggttg--agccatcaaactgttat 1254

                                        
Query: 171  gatgctttgaacaccaacaccttcccta 198
            ||||||||||||||||||||||||||||
Sbjct: 1255 gatgctttgaacaccaacaccttcccta 1282