Jatropha Genome Database

JcCB0158231.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0158231.10 + phase: 1 /pseudo/partial
         (641 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05217                                                            995   0.0  

>KJC_c05217 
          Length = 845

 Score =  995 bits (502), Expect = 0.0
 Identities = 516/518 (99%), Gaps = 2/518 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttggagattcaaggtgcagaacatgtaacatcttacaaagatactatgttccgaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 catttggagattcaaggtgcagaacatgtaacatcttacaaagatactatgttccgaaat 596

                                                                       
Query: 61  ttcagcgccatcgcgtgaagcattatcttagacatagcttggaaaagtctactgtttatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttcagcgccatcgcgtgaagcattatcttagacatagcttggaaaagtctactgtttatc 536

                                                                       
Query: 121 agaaaaatgattccagtttcttggtgcatgctgcctctggacagccttttgaacctcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 agaaaaatgattccagtttcttggtgcatgctgcctctggacagccttttgaacctcagc 476

                                                                       
Query: 181 cagaagcttataaccctaagagtgcatcaaaatctgttctcaatgcaatagatgctttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cagaagcttataaccctaagagtgcatcaaaatctgttctcaatgcaatagatgctttct 416

                                                                       
Query: 241 acagattttcgcgtcctcacactgttataggcacagctctgagcattttatcagtttctc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 415 acagattttcgcgtcctcacactgttataggcacagctctgagcattttatcag-ttctc 357

                                                                       
Query: 301 tccttgctgttgagaaactctcagatctttctccactattttttacaggtgttttggagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tccttgctgttgagaaactctcagatctttctccactattttttacaggtgttttggagg 297

                                                                       
Query: 361 ctgtggctgctgcccttatgatgaatatatacattgttggtttaaatcagttgtctgaca 420
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ctgtggctgctg-ccttatgatgaatatatacattgttggtttaaatcagttgtctgaca 238

                                                                       
Query: 421 tagaaatagacaaggttaacaagccatatcttccattggcatctggagagtactctacgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tagaaatagacaaggttaacaagccatatcttccattggcatctggagagtactctacgg 178

                                                 
Query: 481 gaactggtgtcttgattgtcacatctttctggataatg 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gaactggtgtcttgattgtcacatctttctggataatg 140