Jatropha Genome Database

JcCB0155891.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0155891.10 + phase: 2 /pseudo/partial
         (295 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01536                                                            210   1e-54

>KJC_c01536 
          Length = 1425

 Score =  210 bits (106), Expect = 1e-54
 Identities = 225/262 (85%), Gaps = 2/262 (0%)
 Strand = Plus / Plus

                                                                        
Query: 9    atctcaattgatgagatggcaggaggtacattcacaatatcttaacggtgggggtttatg 68
            |||||||||||||||||||| |||||| |||| ||||||||| || || || | ||||||
Sbjct: 996  atctcaattgatgagatggcgggaggttcatttacaatatct-aatggaggag-tttatg 1053

                                                                        
Query: 69   gaagtcttttgagtacaccgatcatcaatcctcctcagtctgctatcttgggtatgcact 128
            ||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |||||||
Sbjct: 1054 gaagtcttttgagtacacccatcatcaaccctcctcagtcggctattttgggcatgcact 1113

                                                                        
Query: 129  ctatagtcagccgtccaatggttgttgatggcaatgtagttccacgaccaatgatgtaca 188
            | ||||| |||||||||||||| ||||  || ||||| || ||  | ||||||||||| |
Sbjct: 1114 cgatagtgagccgtccaatggtggttggaggaaatgttgtacccaggccaatgatgtata 1173

                                                                        
Query: 189  tagcactaacatatgatcatcggctaattgacggaagagaggctgtgtttttcttacgcc 248
            | || || |||||||||||| |||| ||||| ||||||||||| || || ||||| ||||
Sbjct: 1174 ttgctctcacatatgatcataggctgattgatggaagagaggcagttttcttcttgcgcc 1233

                                  
Query: 249  gtatcaaagatgtagtagagga 270
            ||||||||||||| || |||||
Sbjct: 1234 gtatcaaagatgtggtggagga 1255