Jatropha Genome Database

JcCB0149161.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0149161.10 + phase: 0 /pseudo/partial
         (678 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08550                                                            791   0.0  

>KJC_c08550 
          Length = 532

 Score =  791 bits (399), Expect = 0.0
 Identities = 475/495 (95%), Gaps = 19/495 (3%)
 Strand = Plus / Minus

                                                                       
Query: 195 gataaattgcacgacggagctcaacctctg-----------tgatttggaatatgaatta 243
           ||||||||||||||||||||||||||||||           |||||||||||||||||||
Sbjct: 532 gataaattgcacgacggagctcaacctctggatgatgacagtgatttggaatatgaatta 473

                                                                       
Query: 244 gatgtttttccggatgttagcactgaagcttcaacggaggctgcagcttgtgtcaaggtc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gatgtttttccggatgttagcactgaagcttcaacggaggctgcagcttgtgtcaaggtc 413

                                                                       
Query: 304 ctgattgcttctggtttaccgagtgactcgacccatccaaatagcacaacagttgaggct 363
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 412 ctgattgcttctggtttaccgagtgact-gacccatccaaatagcacaacagttgaggct 354

                                                                       
Query: 364 cctttaaccataaatataccaaatgggaagccatgtagattcacatcagaaaatttgcaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cctttaaccataaatataccaaatgggaagccatgtagattcacatcagaaaatttgcaa 294

                                                                       
Query: 424 cctgctattatgaagggggtgaatattacagttccagtttctgttcagaaacagcctttg 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 293 cctgctattatgaagggggtgaatattacagttccagtttctgttcagaaacagcc-ttg 235

                                                                       
Query: 484 cctgcagtaacatctgctgaaggattggatgcaaatggatctggaagtggagtgccacga 543
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 234 cctgcagtaacatctgctgaa-gattggatgcaaatggatctggaagtggagtgccacga 176

                                                                       
Query: 544 aggaaaagaaagccatggtcagactctgaggatctggaactaattgctgctg-tgcagaa 602
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 175 aggaaaagaaagccatggtcagactctgaggatctggaactaattgctgctgttgcagaa 116

                                                                       
Query: 603 atatgg-tgaagggaattggg---caaatatcttaagaagtgaagtcaagtgggatagaa 658
           |||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||
Sbjct: 115 atatggttgaagggaattgggtcttaaatatcttaagaagtgaagtcaagtgggatagaa 56

                          
Query: 659 ctgcttcacagctat 673
           |||||||||||||||
Sbjct: 55  ctgcttcacagctat 41