Jatropha Genome Database

JcCB0143221.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0143221.10 + phase: 0 /pseudo/partial
         (1095 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08147                                                            369   e-101

>KJC_c08147 
          Length = 734

 Score =  369 bits (186), Expect = e-101
 Identities = 213/224 (95%), Gaps = 11/224 (4%)
 Strand = Plus / Minus

                                                                       
Query: 158 agaacttcctcagttaagaagtacgacatcaatggagcttggttgtgatgcccgaggcta 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 agaacttcctcagttaagaagtacgacatcaatggagcttggttgtgatgcccgaggcta 167

                                                                       
Query: 218 ttctcgtgctggatttgataccacatcatggtactgtgttattctagcaggaagactggg 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ttctcgtgctggatttgataccacatcatggtactgtgttattctagcaggaagactggg 107

                                                                       
Query: 278 cccagaactcaacaaaatgcgcgaa-----------ggtaggagaactattatcaagtga 326
           |||||||||||||||||||||||||           ||||||||||||||||||||||||
Sbjct: 106 cccagaactcaacaaaatgcgcgaaaccatgcgcagggtaggagaactattatcaagtga 47

                                                       
Query: 327 tggaaaattgagtgatgttgatgatgaccaatccttattgctgg 370
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  tggaaaattgagtgatgttgatgatgaccaatccttattgctgg 3