Jatropha Genome Database

JcCB0143121.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0143121.10 - phase: 0 /pseudo
         (957 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c12188                                                           1017   0.0  

>KJC_c12188 
          Length = 877

 Score = 1017 bits (513), Expect = 0.0
 Identities = 520/521 (99%), Gaps = 1/521 (0%)
 Strand = Plus / Plus

                                                                       
Query: 412 cccgcccgttcaattcaaaatccagagtctagaccgccgccgccgccgatatctgctgcg 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cccgcccgttcaattcaaaatccagagtctagaccgccgccgccgccgatatctgctgcg 60

                                                                       
Query: 472 acagctactgctacggcgccgagacctccgataccgcctactaggaggacggaggcggtg 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acagctactgctacggcgccgagacctccgataccgcctactaggaggacggaggcggtg 120

                                                                       
Query: 532 cataactttgcttacttctccaagcatagagcgagaggcggcgtgttagaaccaggaccg 591
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cataactttgcttacttctccaagcatagagcgagaggcggcgtgttagaaccaggaccg 180

                                                                       
Query: 592 tccaatttacgacatgctgtaagggaatcgactgttgtggactccagtgatacaccagcg 651
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tccaatttacgacatgctgtaagggaatcgactgttgtggactccagtgatacaccagcg 240

                                                                       
Query: 652 atgccgtctgagtctagggtttcagaggcggcggtagctagaaatactgccggtgtatca 711
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgccgtctgagtctagggtttcagaggcggcggtagctagaaatactgccggtgtatca 300

                                                                       
Query: 712 agtggtgataatggttgcgggaccatgagtggcgctgcagcagcgggtacatcatcacgt 771
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agtggtgataatggttgcgggaccatgagtggcgctgcagcagcgggtacatcatcacgt 360

                                                                       
Query: 772 gcaggtggaggtaacaatagggagatgtatgacgtgtgaaattactgtgacttcatctcc 831
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 361 gcaggtggaggtaacaatagggagatg-atgacgtgtgaaattactgtgacttcatctcc 419

                                                                       
Query: 832 cggcggctccagtgcgagtgccgaaccaccatcacaaaagccggcgacggaggaccggaa 891
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cggcggctccagtgcgagtgccgaaccaccatcacaaaagccggcgacggaggaccggaa 479

                                                    
Query: 892 gcggaagggaagggaggaggaaacggagtatcacagcgagg 932
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gcggaagggaagggaggaggaaacggagtatcacagcgagg 520