Jatropha Genome Database

JcCB0143101.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0143101.10 - phase: 0 
         (1284 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c12387                                                            111   4e-24
KJC_c06975                                                             92   4e-18

>KJC_c12387 
          Length = 828

 Score =  111 bits (56), Expect = 4e-24
 Identities = 128/152 (84%)
 Strand = Plus / Minus

                                                                       
Query: 275 ccatttcagtagctggtgctgtagttgggaggacttttgtgattagtaatagtgagaatc 334
           ||||||| ||||||||||||||  | ||||| || ||||||||||| || | ||| ||||
Sbjct: 435 ccatttccgtagctggtgctgtgatcgggagaacctttgtgattagcaacaatgaaaatc 376

                                                                       
Query: 335 caatatggaaacaacactttaatgttcctgttgcacatcatgctgcagaggtacattttg 394
           |  | |||| |||||| ||| | ||||||||||||||||||||||| || || |||||| 
Sbjct: 375 ctgtttggacacaacatttttacgttcctgttgcacatcatgctgctgaagtgcattttc 316

                                           
Query: 395 ttgtcaaagacagtgatgttgttggttcacag 426
           |||| ||||||||||||||| | |||||||||
Sbjct: 315 ttgttaaagacagtgatgttttgggttcacag 284



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 78/94 (82%)
 Strand = Plus / Minus

                                                                       
Query: 595 gttggttctggtcctgattacaatggggttcaagggacatactttcctcttaggaaagga 654
           |||||| | |||||||||||  |||| |||| ||| || || ||||||||||||||||| 
Sbjct: 115 gttggtgcaggtcctgattatcatggtgttccaggcacgtattttcctcttaggaaaggt 56

                                             
Query: 655 ggtaaagttaatctttatcaagacgctcatgttc 688
           || | ||| | |||||||||||| || |||||||
Sbjct: 55  ggaacagtgactctttatcaagatgcccatgttc 22


>KJC_c06975 
          Length = 755

 Score = 91.7 bits (46), Expect = 4e-18
 Identities = 161/198 (81%), Gaps = 1/198 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1080 ggaagtgggaacaatctatacccatcatcagaaaacagtgatagtggacgctgatgctgg 1139
            |||||| ||||| || ||||| || ||||||||||| ||||| || || |||||||| ||
Sbjct: 651  ggaagttggaactatatatactcaccatcagaaaacggtgattgtagatgctgatgccgg 592

                                                                        
Query: 1140 tcaccatagaagaaaga-tcatagcttttattggaggccttgatttatgcaggggccgat 1198
              |  |||||||||| | || |||||||| |||| || |||||||||||    || ||||
Sbjct: 591  caataatagaagaaaaaatcttagcttttgttggtggacttgatttatgtgatggacgat 532

                                                                        
Query: 1199 atgatactccacagcatcctctttttaggaccttggaaacagtgcacaaagacgactatc 1258
            | ||||||||||| || ||| | ||||||||  || |||| ||||||||||| |||||||
Sbjct: 531  acgatactccacatcaccctatatttaggacactgcaaacggtgcacaaagatgactatc 472

                              
Query: 1259 ataatcctactttcacgg 1276
            | || |||||||||||||
Sbjct: 471  acaaccctactttcacgg 454



 Score = 71.9 bits (36), Expect = 4e-12
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                               
Query: 895 caggaaggtgtgagagtgctgcttcttgtatgggatgatcctacttctagga 946
           |||||||| || ||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 111 caggaaggagtaagagtgctgcttcttgtttgggatgatcctacttcaagga 162