Jatropha Genome Database

JcCB0141621.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0141621.10 + phase: 0 /pseudo/partial
         (750 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03516                                                            121   3e-27
KJC_c00709                                                             50   8e-06

>KJC_c03516 
          Length = 931

 Score =  121 bits (61), Expect = 3e-27
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                       
Query: 690 gttgtgttcatatcactagatgatgatgaagaaactttccagcaatccttgggaggcatg 749
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttgtgttcatatcactagatgatgatgaagaaactttccagcaatccttgggaggcatg 60

            
Query: 750 c 750
           |
Sbjct: 61  c 61


>KJC_c00709 
          Length = 1639

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                        
Query: 130  ttatatttctcggcatcatggtgtggcccatgtcagcgattcaccccagtcttggtggaa 189
            ||||||||||| | |||||||||||| ||||||  ||  ||||| ||| ||||||| |||
Sbjct: 1442 ttatatttctctggatcatggtgtgggccatgtaggcatttcacaccaatcttggtcgaa 1383

                 
Query: 190  gccta 194
            |||||
Sbjct: 1382 gccta 1378