Jatropha Genome Database

JcCB0138801.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0138801.10 + phase: 0 /partial
         (455 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09840                                                            228   9e-60
KJC_c06333                                                             50   5e-06

>KJC_c09840 
          Length = 462

 Score =  228 bits (115), Expect = 9e-60
 Identities = 122/123 (99%), Gaps = 1/123 (0%)
 Strand = Plus / Minus

                                                                       
Query: 334 gcttggtatatgggcctcgaattaggaaagatcaacataaaacgattt-gctgatggtga 392
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 462 gcttggtatatgggcctcgaattaggaaagatcaacataaaacgatttagctgatggtga 403

                                                                       
Query: 393 aatttatgtccagttgcaagaaagtgttagaggatgtgatgtatatctattacaaccaac 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aatttatgtccagttgcaagaaagtgttagaggatgtgatgtatatctattacaaccaac 343

              
Query: 453 ctg 455
           |||
Sbjct: 342 ctg 340


>KJC_c06333 
          Length = 482

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 51/57 (89%), Gaps = 2/57 (3%)
 Strand = Plus / Minus

                                                                    
Query: 386 atggtgaaatttat-gtccagtt-gcaagaaagtgttagaggatgtgatgtatatct 440
           |||||||||||||| ||||| || ||||||||| || |||||||||||||| |||||
Sbjct: 481 atggtgaaatttatagtccaattagcaagaaagcgtcagaggatgtgatgtttatct 425