Jatropha Genome Database

JcCB0136181.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0136181.20 - phase: 0 /pseudo/partial
         (639 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07930                                                            531   e-151

>KJC_c07930 
          Length = 304

 Score =  531 bits (268), Expect = e-151
 Identities = 288/292 (98%), Gaps = 2/292 (0%)
 Strand = Plus / Minus

                                                                       
Query: 231 tagaacagtacagcagatgatggagacgatggagagaatgatggaagacccttttgccta 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tagaacagtacagcagatgatggagacgatggagagaatgatggaagacccttttgccta 233

                                                                       
Query: 291 tacgggtacttggccatcagagccaccatcaccagttgaacgaagtgggtatagcagagg 350
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tacgggtaattggccatcagagccaccatcaccagttgaacgaagtgggtatagcagagg 173

                                                                       
Query: 351 aaggactccatgggagataaaagaaggagaaacagagtacaagatgagatttgacatgcc 410
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 gaggactccatgggagataaaagaaggagaaacagagtacaagatgagatttgacatgcc 113

                                                                       
Query: 411 tggaatgactaaagaagatgtgaaggtatggg-tgaagagaagatgttgg-tttgaaagc 468
           |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 112 tggaatgactaaagaagatgtgaaggtatgggttgaagagaagatgttggttttgaaagc 53

                                                               
Query: 469 agaggaggtgcccgagaaaaataatgtcaatggtgcacaaaatggaatagag 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  agaggaggtgcccgagaaaaataatgtcaatggtgcacaaaatggaatagag 1