Jatropha Genome Database

JcCB0133991.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0133991.10 + phase: 2 /partial
         (259 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00025                                                            509   e-145

>KJC_c00025 
          Length = 4221

 Score =  509 bits (257), Expect = e-145
 Identities = 257/257 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    cctaagaatcaacctagcgaaatcccatatttcatatatcagtagaaaaaggaatgatcc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3798 cctaagaatcaacctagcgaaatcccatatttcatatatcagtagaaaaaggaatgatcc 3739

                                                                        
Query: 61   atcaggttcaggaccgatctctaataatgagtcagatcgaaccaatattaatccatttta 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3738 atcaggttcaggaccgatctctaataatgagtcagatcgaaccaatattaatccatttta 3679

                                                                        
Query: 121  tcccatttattccaagacaaggattcaacaatcacttaaacaaaatcaaggaactattag 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3678 tcccatttattccaagacaaggattcaacaatcacttaaacaaaatcaaggaactattag 3619

                                                                        
Query: 181  tacgttgttgaatagaaataaggaatgtcaatctttgataattttgtcatcatctaattg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3618 tacgttgttgaatagaaataaggaatgtcaatctttgataattttgtcatcatctaattg 3559

                             
Query: 241  ttttcgaatggatccat 257
            |||||||||||||||||
Sbjct: 3558 ttttcgaatggatccat 3542