Jatropha Genome Database

JcCB0133611.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0133611.20 + phase: 2 /partial
         (523 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01241                                                            385   e-107
KJC_c11464                                                            151   2e-36

>KJC_c01241 
          Length = 598

 Score =  385 bits (194), Expect = e-107
 Identities = 194/194 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctgactcatcaacaccaattgaagaaacggtgagggcaatgaattatgtgattgataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gcctgactcatcaacaccaattgaagaaacggtgagggcaatgaattatgtgattgataa 453

                                                                       
Query: 61  ggggtgggcattttattggggcactagtgagtggtctgcccagcagatcactgaagcgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ggggtgggcattttattggggcactagtgagtggtctgcccagcagatcactgaagcgtg 513

                                                                       
Query: 121 gggcattgcagaaagattggacttggtgggaccaattgttgagcaaccagagtataatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gggcattgcagaaagattggacttggtgggaccaattgttgagcaaccagagtataatct 573

                         
Query: 181 actatcaaggcaca 194
           ||||||||||||||
Sbjct: 574 actatcaaggcaca 587


>KJC_c11464 
          Length = 488

 Score =  151 bits (76), Expect = 2e-36
 Identities = 76/76 (100%)
 Strand = Plus / Minus

                                                                       
Query: 430 tcaacttgcaattgcatggtgtgctgctaatcccaatgtctcatcagttattactggtgc 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tcaacttgcaattgcatggtgtgctgctaatcccaatgtctcatcagttattactggtgc 429

                           
Query: 490 tacaagggagtctcag 505
           ||||||||||||||||
Sbjct: 428 tacaagggagtctcag 413