Jatropha Genome Database

JcCB0133611.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0133611.10 - phase: 0 /pseudo/partial
         (458 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01241                                                            611   e-175

>KJC_c01241 
          Length = 598

 Score =  611 bits (308), Expect = e-175
 Identities = 327/334 (97%), Gaps = 1/334 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctccacaatatgtttccgggacaaccccttatcattagggccagaacctccccaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ccctccacaatatgtttccgggacaaccccttatcattagggccagaacctccccaaaag 274

                                                                       
Query: 61  atcttagtagacacgacgacatccgaccgcttccatccgagctcgcggatcgcctggccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atcttagtagacacgacgacatccgaccgcttccatccgagctcgcggatcgcctggccc 214

                                                                       
Query: 121 atgatctcctcagctcttccattggcataaacctctgcgttatcaaagaaattaacacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 atgatctcctcagctcttccattggcataaacctctgcgttatcaaagaaattaacacca 154

                                                                       
Query: 181 tggtctctgcaacactgtaagagggactttgcctccttgacatcgagctggttaccaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 tggtctctgcaacactgtaagagggactttgcctccttgacatcgagctggttaccaaag 94

                                                                       
Query: 241 cttacccaagcgccataggagagctggctgaccttgagcccagaccgacctaggttcttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  cttacccaagcgccataggagagctggctgaccttgagcccagaccgacctaggttcttg 34

                                             
Query: 301 tactgcannnnnnngaatagggagatacggaaat 334
           |||||||       ||||||||||||||||||||
Sbjct: 33  tactgca-ttttttgaatagggagatacggaaat 1