Jatropha Genome Database

JcCB0130751.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0130751.20 + phase: 0 /partial
         (465 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07546                                                            125   1e-28

>KJC_c07546 
          Length = 657

 Score =  125 bits (63), Expect = 1e-28
 Identities = 147/175 (84%)
 Strand = Plus / Plus

                                                                       
Query: 279 tcccaggttccatctcaggtggtttactcctgttgctgagattcgtctttgtggtcatgc 338
           |||||| ||||| || |||||||||||||||||||||||||||   ||||||| ||||||
Sbjct: 1   tcccagattccaccttaggtggtttactcctgttgctgagattaagctttgtgctcatgc 60

                                                                       
Query: 339 gactctagcagcttcacacatactgttctctaatggctgggtaaattctagcacaattga 398
            || ||||||||||||||||  || |||||||||   | ||||||||||| || ||||||
Sbjct: 61  aacactagcagcttcacacactctcttctctaataatttggtaaattctaacataattga 120

                                                                  
Query: 399 atttgtcacactatctgggtttctaattgctaagaaagttactgaaatcagcaat 453
            ||||  |||||||||||| || | | |||||||||| || |||||| |||||||
Sbjct: 121 gtttgctacactatctgggattttgactgctaagaaaattcctgaaaccagcaat 175