Jatropha Genome Database

JcCB0130451.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0130451.10 + phase: 0 /TE/pseudo/partial
         (1263 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04660                                                            343   6e-94
KJC_c08597                                                            137   7e-32

>KJC_c04660 
          Length = 606

 Score =  343 bits (173), Expect = 6e-94
 Identities = 257/285 (90%)
 Strand = Plus / Minus

                                                                        
Query: 748  gaaattggaaagttgggtacgaagccatgcagtgctctaatgactcctaatttgcaactt 807
            |||| ||||||||||||| | |||||||||||||||| ||||||||||||||||||||||
Sbjct: 285  gaaactggaaagttgggtgccaagccatgcagtgctccaatgactcctaatttgcaactt 226

                                                                        
Query: 808  tcaattgatggtgagctatttgatgatcctgagatgtatagaaggttagtgggcaaattg 867
            |||||||||||| || ||||||||||||| |||||||||||||| |||||||||||| ||
Sbjct: 225  tcaattgatggtaagatatttgatgatcccgagatgtatagaagattagtgggcaaactg 166

                                                                        
Query: 868  aattatcttacagtaacacgtccagatattgcttactctatgagcgtcttaaaccagttt 927
            ||||||||||| ||||||||||||||||||||||||||| ||||| |||||| ||| |||
Sbjct: 165  aattatcttaccgtaacacgtccagatattgcttactctgtgagcatcttaagccaattt 106

                                                                        
Query: 928  atgtcttctcccactgttatccattgggaagctttaggacagattttctgctacttgaaa 987
            ||||||||||| |||| ||  ||||||||||||||| |||| ||||| |||| |||||||
Sbjct: 105  atgtcttctcctactgatagtcattgggaagctttatgacaaattttgtgctgcttgaaa 46

                                                         
Query: 988  ggtaatccaggtcatggcctgctttacagtaatcatgggcatttg 1032
            | |||||||||   |||||| ||||||||||||||| ||||||||
Sbjct: 45   gttaatccaggctgtggcctcctttacagtaatcataggcatttg 1


>KJC_c08597 
          Length = 545

 Score =  137 bits (69), Expect = 7e-32
 Identities = 88/93 (94%), Gaps = 1/93 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1098 atattgtgtctttgtaagtggaaacttgatatcatggaggagcaagaaacaaaatgtatt 1157
            ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 545  atattgtgt-tttgtaggtggaaacttgatatcatggaggagcaagaaacaaaatgtagt 487

                                             
Query: 1158 ctcacgatcgagtgttaaatcagaatatcgagc 1190
            |||||||||||||  ||||||||||||||||||
Sbjct: 486  ctcacgatcgagtaataaatcagaatatcgagc 454