Jatropha Genome Database

JcCB0128961.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0128961.10 + phase: 1 /pseudo/partial
         (512 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03573                                                            157   3e-38

>KJC_c03573 
          Length = 526

 Score =  157 bits (79), Expect = 3e-38
 Identities = 217/263 (82%)
 Strand = Plus / Plus

                                                                       
Query: 9   agcttggtggtagtgaacgagctactccaaagggtgtcttaaagctcatgaatgttgagg 68
           ||||||||||||||||| ||||||||||||| |||||  | ||||||||||| || ||  
Sbjct: 138 agcttggtggtagtgaaagagctactccaaaaggtgtgcttaagctcatgaaagtggaca 197

                                                                       
Query: 69  gcttgaccatctaccatgttaaaagccacttgcagaagtacagaacggcaagatataaac 128
           | ||||| ||||| ||||| ||||||||||| ||||| ||||| || || ||||||| ||
Sbjct: 198 gtttgacaatctatcatgtcaaaagccacttacagaaatacaggacagctagatatagac 257

                                                                       
Query: 129 cagagtcatctgaaggatcttcagagaaaaagttgaatcctattgatgaaatgaaatctc 188
           |||| ||||| |||||||| ||||||||||| |||| |||| | || |||||    ||||
Sbjct: 258 cagactcatcagaaggatcctcagagaaaaaattgactcctttggaagaaatatcctctc 317

                                                                       
Query: 189 ttgacttgaaaacgagcatggggatcactgaagcattgcgattgcaaatggaggttcaga 248
           |||||||||||||| | || |  || ||||||||  |  |||| || ||||| |||||||
Sbjct: 318 ttgacttgaaaacgggtattgaaattactgaagctctaagattacagatggaagttcaga 377

                                  
Query: 249 agcgactccatgaacagcttgag 271
           |||| || |||||||||||||||
Sbjct: 378 agcggctgcatgaacagcttgag 400