Jatropha Genome Database

JcCB0126561.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0126561.10 + phase: 2 /pseudo/partial
         (532 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03084                                                            184   1e-46

>KJC_c03084 
          Length = 596

 Score =  184 bits (93), Expect = 1e-46
 Identities = 174/201 (86%), Gaps = 5/201 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   acaggaagaagtcaaatcctatattattaggctggatcattggagatatttggatccaat 63
           |||||||||||||| ||||  |||||| |||||||||||| |||||| |||||||||| |
Sbjct: 91  acaggaagaagtcacatccggtattatcaggctggatcatcggagatgtttggatccact 150

                                                                       
Query: 64  ccaactcctgaa-----aaccactccatttcatcctaaatctccatacgcagtgctgaaa 118
           ||| ||||| ||     ||| ||||| |||||||||| |||||||||||||| |  ||||
Sbjct: 151 ccacctcctcaatcagaaacgactccgtttcatcctagatctccatacgcagcgtcgaaa 210

                                                                       
Query: 119 tgtgttgcgcattggtatacagttaattaccatgaggcttaccggttgtttgcttgtaac 178
           |||| |||||||||||| ||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 211 tgtgctgcgcattggtacacagttaattaccgtgaggcttacgggttgtttgcttgtaac 270

                                
Query: 179 cgaaccctgttcaatcacgaa 199
            ||| ||||||||| ||||||
Sbjct: 271 ggaatcctgttcaaccacgaa 291



 Score = 65.9 bits (33), Expect = 9e-11
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 321 aagaccatgtggtgattgataaaaggtactttagacc 357
           |||| ||||||||||||||||||||||||||||||||
Sbjct: 549 aagatcatgtggtgattgataaaaggtactttagacc 585